Rapdistance software

Members of our group have previously shown that although the R. A majority of R. The ITS1 was amplified and sequenced by the protocol previously described for PCR amplification and double-stranded sequencing of this region 7. The purpose of this study was to examine the molecular diversity of isolates of R.

Previous research has shown that R. Furthermore, studies of the R. We proposed that in areas of the world which could be regarded as relatively isolated from the mainstream intensive salmonid culture of North America and Europe, the bacterium shows genetic divergence. The results presented here broadly support this hypothesis, although some isolates, most notably Marion Forks, vary from this pattern.

This study used an objective method based on RAPDistance software to examine the extent of molecular diversity among R.

National Center for Biotechnology Information , U. Journal List Appl Environ Microbiol v. Appl Environ Microbiol. Atienzar , 2 Sarah M. Alexander , 1 Lynne F. Cooper , 1 and Martyn L. Gilpin 1. Hilton Grayson. Franck A. Sarah M. Lynne F. Martyn L. Author information Article notes Copyright and License information Disclaimer. Phone: 44 Fax: 44 E-mail: ku.

Received Aug 30; Accepted Oct This article has been cited by other articles in PMC. Abstract The molecular diversity among 60 isolates of Renibacterium salmoninarum which differ in place and date of isolation was investigated by using randomly amplified polymorphic DNA RAPD analysis. Differentiating R. Open in a separate window.

TR allele profile of R. Nucleotide sequence accession numbers. Uniformity in the biochemical properties of Renibacterium salmoninarum isolates obtained from several sources. Random amplified polymorphic DNA analysis provides rapid differentiation among isolates of the fish pathogen Flavobacterium psychrophilum and among Flavobacterium species.

There is a good deal of information about each program, and the list is organized by program type. Montgomery Slatkin's lab at UC Berkeley. This includes several phylogenetics-related programs, as well as software for population biology and modelling evolutionary processes. Software Listing at Glasgow Extensive and well organized list of software sources and providers, found at Taxonomy and Systematics at Glasgow. The site includes alignment, analysis and interpretive programs.

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